JUCHMME: Biological sequence analysis using Class Hidden Markov Models (CHMM)

JUCHMME, an acronym for Java Utility for Class Hidden Markov Models and Extensions, is a tool developed for biological sequence analysis.

The overall aim of this work has been to develop a software tool of capable of offering a large collection of standard algorithms for Hidden Markov Models (HMMs) as well as a number of extensions and to evaluate this model on various biological problems. The JUCHMME framework is characterized by:

Source code: https://github.com/pbagos/juchmme

JUCHMME User's Guide: [PDF]

Pantelis Bagos,
Mar 2, 2019, 3:19 AM