JUCHMME: Biological sequence analysis using Class Hidden Markov Models (CHMM)


JUCHMME, an acronym for Java Utility for Class Hidden Markov Models and Extensions, is a tool developed for biological sequence analysis.

The overall aim of this work has been to develop a software tool of capable of offering a large collection of standard algorithms for Hidden Markov Models (HMMs) as well as a number of extensions and to evaluate this model on various biological problems. The JUCHMME framework is characterized by:



Source code: https://github.com/pbagos/juchmme

JUCHMME User's Guide: [PDF]

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Pantelis Bagos,
May 4, 2019, 9:46 AM
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juchmme_v1.0.3.zip
(5462k)
Pantelis Bagos,
May 4, 2019, 9:46 AM
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