Prediction of membrane proteins
- PRED-TMBB2: Improved topology prediction and detection of beta-barrel outer membrane proteins (NEW)
- HMMpTM: Combined prediction of membrane protein topology and post-translational modification
- ConBBPRED: Consensus Prediction of TransMembrane Beta-Barrel Proteins
- PRED-TMBB:Predicting and discriminating beta-barrel outer membrane proteins with Hidden Markov Models
- HMM-TM: A
Hidden Markov Model method for the topology prediction of
alpha-helical membrane proteins that incorporates experimentally derived
topological information (Mirror at the University of Athens)
- MCMBB: Discrimination of beta-barrel outer membrane proteins with a Markov chain model
- PRED-COUPLE 2: A tool that predicts the coupling specificity of G-protein coupled receptors to G-proteins
- PRED-COUPLE: A
method that implements refined profile Hidden Markov Models to predict
the coupling specificity of G-protein coupled receptors to G-proteins
- PRED-GPCR: GPCR
Family Classification from sequence alone based on a probabilistic
method that uses family-specific profile Hidden Markov Models
Prediction of Signal peptides
Sequence analysis- migma: The Mixture Transition Distribution model for biological sequence analysis (NEW)
- NON-RED: A web tool to select biological sequences from a given set, with similarity/homology less than a user-defined level
- vizHMM: A tool for visual representation of Hidden Markov Models
- JUCHMME: Biological sequence analysis using Class Hidden Markov Models (CHMM) (NEW)
Biological Network analysis
- powerClust is an easy-to-use web application for clustering analysis and visualization of bipartite graphs
- VICTOR A visual analytics web application for comparing cluster sets
- NAP Topological network analysis and comparison
Databases- OMPdb: a database of beta-barrel outer membrane proteins from Gram-negative bacteria
- ExTopoDB: A database of experimentally derived topological models of transmembrane proteins
- human_gpDB: A database of human GPCRs, G-proteins, Effectors and their interactions
- gpDB: a database of G-proteins and their interaction with GPCRs
Biostatistics Software
- metagen: STATA program for meta-analysis of genetic association studies
- metatrend: STATA program for estimating trends in cumulative meta-analysis
- STATA programs for multivariate meta-analysis of genetic association studies including models for continuous and discrete outcomes, prospective and retrospective likelihood, and the genetic model-free approach
- Poisson meta-analysis: Mixed-Effects Poisson Regression Models for Meta-Analysis of Follow-Up Studies with Constant or Varying Durations
- Haplotype meta-analysis: STATA programs for meta-analysis of haplotype association studies
- meta-tdt: Meta-analysis of Family-based and Case-control Genetic Association Studies That Use the Same Cases
- Robust meta-analysis: robust methods for analysis and meta-analysis of GAS and GWAS
- meta-ROC: meta-analysis for comparison of diagnostic tests (NEW)
- gllamm: meta-analysis in STATA using gllamm (NEW)
- regression: the covariance of regression coefficients calculated from summary data (NEW)
- multiple: A Multivariate Method for Meta-Analysis of Multiple Outcomes in Genetic Association Studies (NEW)
- GWAR: Tools for Robust Analysis and Meta-Analysis of Genome-Wide Association Studies (NEW)
- MAGE Meta-analysis of gene-expression data
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