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Pantelis Bagos



Current Position

Past Positions

Education

Research interests

My research is focused on the computational analysis of biological sequences (DNA, RNA and proteins). The main research interests include:
  • prediction of protein structure and function from the primary sequence,
  • development of stochastic models for analyzing biological sequences,
  • large-scale genome analyses,
  • development of methodology for genetic association and gene expression studies (See more).

Publications

I have co-authored more than 100 publications in peer-reviewed journals (Total ISI Impact Factor = 333.603) . For a complete list of publications see here.

Citations


Scopus: citations= 2305, h-index=29, m-index=2.07 (Scopus Citations)
Google Scholar: citations= 3342, h-index=34, m-index=2.42 (Google Scholar Citations)

Research projects as PI

  • 1/2017-12/2019, Delegate of the University of Thessaly in the board of directors of the national infrastructure ELIXIR-GR. Budget allocated to UTH for maintaining the web-tools PRED-TMBB2, OMPdb, GWAR, METAGEN and other research and educational activities
  • 1/2017-12/2019, State Scholarship Foundation fellowship for post-doctoral studies (K. Pantavou): «Meta-analysis of environmental end genetic epidemiology studies»
  • 12/2016-8/2017, State Scholarship Foundation fellowship for post-doctoral studies (P. Kontou): «Methodology for meta-analysis of microarray studies»
  • 4/2015-8/2016, State Scholarship Foundation fellowship for post-doctoral studies (M. Theodoropoulou): «Bioinformatics studies of structure and function of membrane proteins»
  •  4/2015-8/2016, NSF fellowship for doctoral studies (K. Vennou): «Methodology for analysis and meta-analysis of gene expression studies» (€29.408)
  • 8/2015-7/2016, «Information System for Patient Monitoring», Private Funding (donation)
  • 2/2014-7/2015: "Integration of Data from Multiple Sources (IntDaMuS)" ARISTEIA II, (General Secretariat for Research and Technology, Principal Investigator
  • 3/2013-2/2015: «Modern bioinformatics techniques in studying the mechanism of action of membrane receptors and their implications in human diseases», CO-OPERATION 2009 program (Program for co-operation of Universities and Enterprises funded by the Greek Ministry of Education), Principal Investigator for UCG
  • 1/2/2011-31/1/2012: "Algorithms for clustering and visualization in systems biology", Academic supervisor (Post-doctoral research fellowship from the State Scholarships Foundation - Greece)
  • 10/2009-09/2010: “Genetic Epidemiology of metabolic syndrome” Principal Investigator, (Greek Ministry of Health)
  • 06/2007-05/2008: “Development of Bioinformatics methodology for recognition of neighboring transmembrane alpha-helices in multispanning membrane proteins from the aminoacid sequence” (Greek-Cyprus co-operation programme)
  • 02/2007-01/2008: "Machine Learning Algorithms for Bioinformatics" Post-doctoral research fellow (Post-doctoral research fellowship from the State Scholarships Foundation - Greece)
  • 01/2006-12/2006: "PYTHAGORAS II: Mathematical models for Bioinformatics" (EPEAEK)
  • 06/2005-08/2006: "PYTHAGORAS: Development of original methodology and software for constructing multiple alignments of biological sequences and their objective evaluation" (EPEAEK)
  • 5/2005- 8/2006: "Postgraduate program in Bioinformatics" (EPEAEK)
  • 11/2002-05/2005: "IRAKLEITOS: Prediction of structure and function of membrane proteins" (EPEAEK)
  • 4/2001-12/2003: "Development of an integrated framework for studying transmembrane receptors and their ligands through the Internet"
  • 4/2000- 8/2000: "Biostatistics action" (EPEAEK)

Reviewer and Editorial Board member

Editorial board member in peer-reviewed journals

Reviewer for peer-reviewed journals

Professional Activities and Administration

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