Software

• Tapas Kanungo HMM software
• Daniel Dementhon HMM software
• Nikolai Shokirev HMM software
• The General HMM library (ghmm)
• Hidden Markov Model (HMM) Toolbox for Matlab by Kevin Murphy
• Java HMM library (jhmm)
• The modhmm package by Hakan Viklund
• An HMM classifier in C#
• HMMs in Perl
• The libhmm package
• The myHMM package
• HMMs in C++
• Mauro Delorenzi's MAMOT HMM software
• HMMs in VB6
• HMMs in python (pyhmm)
• Piero Fariselli's PHMM
• Programs for Biological sequence analysis by Peter Sestoft