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Hidden Markov Models for biological sequence analysis: the JUCHMME package


  • Introduction to Hidden Markov Models (HMMs) (4 hours)
    • The model
    • Decoding
    • Training
    • Labels
  • Applications of HMMs (4 hours)
    • The PRED-TMBB method
    • Detailed examples using JUCHMME
  • Extensions of HMMs (4 hours)
    • Methods that condition on previous observations
    • Hidden Neural Networks
    • Detailed examples using JUCHMME
  • Semisupervised methods for HMMs (4 hours):
    • The self-training method
    • Variants of the method
    • Detailed examples using JUCHMME
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